Structure of this guide; questions to be answered  

We hope that this guide will not only offer practical and easy-to-follow advice as to how to use this software, but also provide a platform that we can share our own thoughts and experiences of trying to interpret the statistical results yielded from a WGA project. Therefore, instead of listing the functions of each menu item, button, and interactive graphical components one by one, we have constructed this guide as a tour through a real WGA annotation process recently completed in our own group (Fellay et al. 2007) .

The following are examples of questions that came up during this study and that led to specific features now implicated in WGAViewer:


We hope this structure will make this user guide more useful. In the following guide, instead of going through buttons and menus, we will mainly go through these questions using real data.